Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015797832.1_cds_XP_016456744.1_5003
CDS Infomation

[gene=LOC107780689] [db_xref=GeneID:107780689] [protein=probable indole-3-acetic acid-amido synthetase GH3.1] [protein_id=XP_016456744.1] [location=join(16317..16639,16808..16909,17321..17835,18030..18901)] [gbkey=CDS]
Sequence

ATGGCCATAGCTACTAGTACTGCTTCATCTCCTCTTGGCCGTCCAGCATGTGAGAAAGAT
GCTAAGGCCCTTCAGTTTATTGAGGAGATGACTAGAAACGTTGATTCAGTCCAAGAAAAG
GTCTTGGCTGAAATCTTAAGTCGAAATGACAATGCTGAGTACCTTCAAAGATTTAAGCTT
CGTGGTGGTACTGACCGTAACACATTCAAGTCCAAAGTACCAGTTGTCACATACGAGGAA
ATCCAACCTGATATTCAGCGTATTGCCAGTGGTGATCGTTCTCTGATTTTCTCATCTCAT
CCCATCTCCGAGTTCCTCACTAGCTCGGGGACATCTGCTGGTGAGAGAAAGCTGATGCCC
ACAATTGAAGAGGAGCTAGACCGGAGACAGCTATTGTACAGCCTTCTCATGCCCGTCATG
AATCTGTATGTACCTGGACTAGACAAAGGGAAAGGCTTGTACTTTCTATTTATAAAGGCA
GAAACCAAGACTCCTGGTGGACTACTTGCCAGACCAGTCCTAACGAGTTACTACAAAAGT
GACCAGTTCAAGACTAGGCCATACGATCCATACAATGTGTATACAAGTCCTAACGAGGCT
ATTCTCTGCGTCGACTCTTTCCAGAGCATGTATACTCAAATGCTTTGTGGCCTTCTCATG
CGAGAACAAGTCCTTCGAGTAGGGGCCGTTTTTGCCTCTGGTCTACTTCGTGCCATTCGT
TTTCTTCAACTCAATTGGCAGCAACTTGCTAAGGATATCGCATATGGGACACTAAACACT
AGAGTTTCTGACCCTTCTATCAAGGAATGCACGTCCAAAATACTTAAACCAAATCCTGAA
CTTGCTGAGTTCGTTATCAAGGAGTGTGAAGGTCAGAATTGGGAAGGGATCATTACTAGA
ATTTGGCCAAATACAAAGTACTTGGATGTGATCGTCACAGGTGCAATGGCTCAATATATC
CATACACTAGACTATTATAGTGGTGGTTTACCAAAGGCTTGCACCATGTATGCATCTTCC
GAGTGTTATTTTGGCCTTAATTTGAACCCAATGTGCAGACCATCTGAAGTATCTTACACC
ATAATGCCTAATATGTGCTACTGTGAGTTTATCCCTCATGACCCAATCAACCCTGCAACG
ATTTCTCCTGACTCACCACCCCGTCTCGTGGACCTGGCTGATGTGGAAATGGGAAGAGAG
TACGAGCTCGTGATCACAACCTACGCCGGATTATGTCGTTACAGAGTTGGTGATATTCTC
CAGGTCACTGGGTTTCACAACTCGGCCCCTCAGTTCAAATTCATAAGGAGGAAGAACGTG
CTATTGAGCATTGATTCGGACAAAACCGATGAGGCCGAGTTGCAAAAGGCAGTTGAGAAC
GCTACGCAAATTTTGCGACCACATGACACAAGTGTGGTTGAATACACTAGCTACGCCGAC
ACTAAAACAATTCCAGGACATTATGTGATCTATTGGGAATTACTTATAAAGGACCCAAAT
AATTCTCCGAGTCACGATGTATTGAACAAATGTTGCTTGGCTATGGAAGAATCATTGAAT
TCAGTTTATCGACAGTGCAGAGTTGCAGATAATTCAATTGGACCATTGGAAATTAGGGTA
GTGAAAAAGGGAACATTTGAAGAGCTAATGGACTATGCAATTTCTAGGGGTGCATCTATA
AATCAGTACAAGGCTCCTAGGTGTGTCAATTTTACCCCTATCTTGGAATTACTAGACTCC
AGGGTAATTTCAGTGCACTTTAGTCCAACTGCTCCTCACTGGACCCCAGAACGACGACGT
TTACAACTCTGA

Peptide Sequence

PEP ID

XP_016456744.1
PEP Infomation

PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Nicotiana tabacum]
Sequence

MAIATSTASSPLGRPACEKDAKALQFIEEMTRNVDSVQEKVLAEILSRNDNAEYLQRFKL
RGGTDRNTFKSKVPVVTYEEIQPDIQRIASGDRSLIFSSHPISEFLTSSGTSAGERKLMP
TIEEELDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFIKAETKTPGGLLARPVLTSYYKS
DQFKTRPYDPYNVYTSPNEAILCVDSFQSMYTQMLCGLLMREQVLRVGAVFASGLLRAIR
FLQLNWQQLAKDIAYGTLNTRVSDPSIKECTSKILKPNPELAEFVIKECEGQNWEGIITR
IWPNTKYLDVIVTGAMAQYIHTLDYYSGGLPKACTMYASSECYFGLNLNPMCRPSEVSYT
IMPNMCYCEFIPHDPINPATISPDSPPRLVDLADVEMGREYELVITTYAGLCRYRVGDIL
QVTGFHNSAPQFKFIRRKNVLLSIDSDKTDEAELQKAVENATQILRPHDTSVVEYTSYAD
TKTIPGHYVIYWELLIKDPNNSPSHDVLNKCCLAMEESLNSVYRQCRVADNSIGPLEIRV
VKKGTFEELMDYAISRGASINQYKAPRCVNFTPILELLDSRVISVHFSPTAPHWTPERRR
LQL

Transcript Sequence

Gene sequence data has not been registered.